No. words: 1524; after pruning: 1498


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.7 (1,1:1339)  170  0.00 0.54 0.54  MoSU013F_B05_BE496863Tu02P018C01P018C071F1_045.ab1      598   781 (0)  C MoSU013R_B05_BE496863Tu02P018C01P018C071R1_045.ab1   (0)   743   560 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  88 nodes

 46 str. conn. components

Path
    1    MoSU013F_B05_BE496863Tu02P018C01P018C071F1_045.ab1     1 
  613  C MoSU013R_B05_BE496863Tu02P018C01P018C071R1_045.ab1   728 
  617    MoSU013F_B05_BE496863Tu02P018C01P018C071F1_045.ab1   617 
  625  C MoSU013R_B05_BE496863Tu02P018C01P018C071R1_045.ab1   716 
  633    MoSU013F_B05_BE496863Tu02P018C01P018C071F1_045.ab1   633 
  645  C MoSU013R_B05_BE496863Tu02P018C01P018C071R1_045.ab1   696 
  653    MoSU013F_B05_BE496863Tu02P018C01P018C071F1_045.ab1   653 
  657  C MoSU013R_B05_BE496863Tu02P018C01P018C071R1_045.ab1   684 
Contig length: old 1340, new 1340

Contig length: old 1340, new 1340
New start: 0