No. words: 1458; after pruning: 1432


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:1128)  326  0.00 0.00 0.00  MoSU008F_C03_BE497999As01P005E01E071F1_027.ab1      435   763 (0)  C MoSU008R_C03_BE497999As01P005E01E071R1_027.ab1   (0)   695   367 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1    MoSU008F_C03_BE497999As01P005E01E071F1_027.ab1     1 
  546  C MoSU008R_C03_BE497999As01P005E01E071R1_027.ab1   584 
  550    MoSU008F_C03_BE497999As01P005E01E071F1_027.ab1   550 
  582  C MoSU008R_C03_BE497999As01P005E01E071R1_027.ab1   548 
  590    MoSU008F_C03_BE497999As01P005E01E071F1_027.ab1   590 
  594  C MoSU008R_C03_BE497999As01P005E01E071R1_027.ab1   536 
  606    MoSU008F_C03_BE497999As01P005E01E071F1_027.ab1   606 
  622  C MoSU008R_C03_BE497999As01P005E01E071R1_027.ab1   508 
Contig length: old 1129, new 1129

Contig length: old 1129, new 1129
New start: 0