No. words: 1290; after pruning: 1264


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 3.5 (1,1:1125)  161  0.61 0.00 0.00  MoSU008F_D03_BE497999As02P005E01E071F1_025.ab1      508   671 (0)  C MoSU008R_D03_BE497999As02P005E01E071R1_025.ab1   (0)   619   456 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  82 nodes

 43 str. conn. components

Path
    1    MoSU008F_D03_BE497999As02P005E01E071F1_025.ab1     1 
  567  C MoSU008R_D03_BE497999As02P005E01E071R1_025.ab1   560 
  571    MoSU008F_D03_BE497999As02P005E01E071F1_025.ab1   571 
  583  C MoSU008R_D03_BE497999As02P005E01E071R1_025.ab1   544 
  587    MoSU008F_D03_BE497999As02P005E01E071F1_025.ab1   587 
  591  C MoSU008R_D03_BE497999As02P005E01E071R1_025.ab1   536 
  603    MoSU008F_D03_BE497999As02P005E01E071F1_025.ab1   603 
  611  C MoSU008R_D03_BE497999As02P005E01E071R1_025.ab1   516 
  615    MoSU008F_D03_BE497999As02P005E01E071F1_025.ab1   615 
  619  C MoSU008R_D03_BE497999As02P005E01E071R1_025.ab1   508 
Contig length: old 1126, new 1126

Contig length: old 1126, new 1126
New start: 0