No. words: 1725; after pruning: 1699


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:1133)  583  0.00 0.00 0.00  MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1      278   868 (0)  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   (0)   857   267 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1    MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1     1 
  605  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   530 
  609    MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1   609 
  629  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   506 
  641    MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1   641 
  645  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   490 
  673    MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1   673 
  677  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   458 
  709    MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1   709 
  713  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   422 
  721    MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1   721 
  725  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   410 
  741    MoSU008F_E03_BE497999At01P005E01E071F1_023.ab1   741 
  745  C MoSU008R_E03_BE497999At01P005E01E071R1_023.ab1   390 
Contig length: old 1134, new 1134

Contig length: old 1134, new 1134
New start: 0