No. words: 1369; after pruning: 1343


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 4.8 (1,1:1121)  238  0.00 0.00 0.40  MoSU008F_F03_BE497999At02P005E01E071F1_021.ab1      442   688 (0)  C MoSU008R_F03_BE497999At02P005E01E071R1_021.ab1   (0)   681   436 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  120 nodes

 62 str. conn. components

Path
    1    MoSU008F_F03_BE497999At02P005E01E071F1_021.ab1     1 
  555  C MoSU008R_F03_BE497999At02P005E01E071R1_021.ab1   569 
  559    MoSU008F_F03_BE497999At02P005E01E071F1_021.ab1   559 
  563  C MoSU008R_F03_BE497999At02P005E01E071R1_021.ab1   561 
  571    MoSU008F_F03_BE497999At02P005E01E071F1_021.ab1   571 
  591  C MoSU008R_F03_BE497999At02P005E01E071R1_021.ab1   533 
  599    MoSU008F_F03_BE497999At02P005E01E071F1_021.ab1   599 
  607  C MoSU008R_F03_BE497999At02P005E01E071R1_021.ab1   517 
  611    MoSU008F_F03_BE497999At02P005E01E071F1_021.ab1   611 
  623  C MoSU008R_F03_BE497999At02P005E01E071R1_021.ab1   501 
Contig length: old 1122, new 1123

Contig length: old 1123, new 1123
New start: 0