No. words: 1563; after pruning: 1537


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.7 (1,1:1126)  430  0.00 0.00 0.00  MoSU008F_E04_BE497999Ld07P005E01E071F1_024.ab1      381   816 (0)  C MoSU008R_E04_BE497999Ld07P005E01E071R1_024.ab1   (0)   747   312 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1    MoSU008F_E04_BE497999Ld07P005E01E071F1_024.ab1     1 
  588  C MoSU008R_E04_BE497999Ld07P005E01E071R1_024.ab1   540 
  604    MoSU008F_E04_BE497999Ld07P005E01E071F1_024.ab1   604 
  636  C MoSU008R_E04_BE497999Ld07P005E01E071R1_024.ab1   492 
Contig length: old 1127, new 1127

Contig length: old 1127, new 1127
New start: 0