No. words: 1017; after pruning: 991


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.7 (1,1:341)  331  0.00 0.00 0.30  MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1        5   342 (166)  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   (172)   337     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   509 
  232    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1    64 
  236  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   274 
  248    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1    80 
  260  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   250 
  264    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1    96 
  268  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   242 
  272    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   104 
  276  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   234 
  332    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   164 
  352  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   158 
  360    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   192 
  364  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   146 
  368    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   200 
  376  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   134 
  384    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   216 
  388  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   122 
  392    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   224 
  396  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   114 
  400    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   232 
  404  C MoSU007R_E06_BE497999Ld07P015E04E101R1_040.ab1   106 
  412    MoSU007F_E06_BE497999Ld07P015E04E101F1_040.ab1   244 
Contig length: old 675, new 676

Contig length: old 676, new 676
New start: 0