No. words: 1562; after pruning: 1522


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:1126)  414  0.23 0.46 0.23  MoSU008F_G04_BE497999Ld09P005E01E071F1_020.ab1      403   837 (0)  C MoSU008R_G04_BE497999Ld09P005E01E071R1_020.ab1   (0)   725   290 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  206 nodes

 105 str. conn. components

Path
    1    MoSU008F_G04_BE497999Ld09P005E01E071F1_020.ab1     1 
  588  C MoSU008R_G04_BE497999Ld09P005E01E071R1_020.ab1   540 
  608    MoSU008F_G04_BE497999Ld09P005E01E071F1_020.ab1   608 
  624  C MoSU008R_G04_BE497999Ld09P005E01E071R1_020.ab1   504 
Contig length: old 1127, new 1127

Contig length: old 1127, new 1127
New start: 0