No. words: 1023; after pruning: 997


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 5.5 (1,1:344)  334  0.00 0.00 0.29  MoSU007F_G06_BE497999Ld09P015E04E101F1_036.ab1        5   345 (163)  C MoSU007R_G06_BE497999Ld09P015E04E101R1_036.ab1   (175)   340     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  170 nodes

 87 str. conn. components

Path
    1  C MoSU007R_G06_BE497999Ld09P015E04E101R1_036.ab1   515 
  271    MoSU007F_G06_BE497999Ld09P015E04E101F1_036.ab1   100 
  287  C MoSU007R_G06_BE497999Ld09P015E04E101R1_036.ab1   229 
  335    MoSU007F_G06_BE497999Ld09P015E04E101F1_036.ab1   164 
Contig length: old 678, new 679

Contig length: old 679, new 679
New start: 0