No. words: 1659; after pruning: 1605


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:1124)  522  0.56 0.00 0.00  MoSU008F_H04_BE497999Ld10P005E01E071F1_018.ab1      324   857 (0)  C MoSU008R_H04_BE497999Ld10P005E01E071R1_018.ab1   (0)   802   269 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  260 nodes

 132 str. conn. components

Path
    1    MoSU008F_H04_BE497999Ld10P005E01E071F1_018.ab1     1 
  583  C MoSU008R_H04_BE497999Ld10P005E01E071R1_018.ab1   543 
  603    MoSU008F_H04_BE497999Ld10P005E01E071F1_018.ab1   603 
  623  C MoSU008R_H04_BE497999Ld10P005E01E071R1_018.ab1   503 
  631    MoSU008F_H04_BE497999Ld10P005E01E071F1_018.ab1   631 
  635  C MoSU008R_H04_BE497999Ld10P005E01E071R1_018.ab1   491 
  695    MoSU008F_H04_BE497999Ld10P005E01E071F1_018.ab1   695 
  699  C MoSU008R_H04_BE497999Ld10P005E01E071R1_018.ab1   427 
  731    MoSU008F_H04_BE497999Ld10P005E01E071F1_018.ab1   731 
  735  C MoSU008R_H04_BE497999Ld10P005E01E071R1_018.ab1   391 
Contig length: old 1125, new 1125

Contig length: old 1125, new 1125
New start: 0