No. words: 1496; after pruning: 1470


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:1115)  372  0.26 0.00 0.00  MoSU008F_A03_BE497999Tu01P005E01E071F1_031.ab1      438   817 (0)  C MoSU008R_A03_BE497999Tu01P005E01E071R1_031.ab1   (0)   679   300 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1    MoSU008F_A03_BE497999Tu01P005E01E071F1_031.ab1     1 
  549  C MoSU008R_A03_BE497999Tu01P005E01E071R1_031.ab1   568 
  557    MoSU008F_A03_BE497999Tu01P005E01E071F1_031.ab1   557 
  585  C MoSU008R_A03_BE497999Tu01P005E01E071R1_031.ab1   532 
  593    MoSU008F_A03_BE497999Tu01P005E01E071F1_031.ab1   593 
  597  C MoSU008R_A03_BE497999Tu01P005E01E071R1_031.ab1   520 
  601    MoSU008F_A03_BE497999Tu01P005E01E071F1_031.ab1   601 
  625  C MoSU008R_A03_BE497999Tu01P005E01E071R1_031.ab1   492 
  629    MoSU008F_A03_BE497999Tu01P005E01E071F1_031.ab1   629 
  633  C MoSU008R_A03_BE497999Tu01P005E01E071R1_031.ab1   484 
  769    MoSU008F_A03_BE497999Tu01P005E01E071F1_031.ab1   769 
  773  C MoSU008R_A03_BE497999Tu01P005E01E071R1_031.ab1   344 
Contig length: old 1116, new 1116

Contig length: old 1116, new 1116
New start: 0