No. words: 1008; after pruning: 982


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.3 (1,1:456)  438  0.00 0.44 0.00  MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1        1   456 (18)  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   (76)   458     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   534 
   97    MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1    19 
  121  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   414 
  125    MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1    47 
  129  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   406 
  145    MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1    67 
  149  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   386 
  153    MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1    75 
  157  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   378 
  165    MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1    87 
  169  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   366 
  173    MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1    95 
  197  C MoSU002R_C07_BE498418As01P005C04C101R1_050.ab1   338 
  201    MoSU002F_C07_BE498418As01P005C04C101F1_050.ab1   123 
Contig length: old 551, new 552

Contig length: old 552, new 552
New start: 0