No. words: 1003; after pruning: 977


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 9.2 (1,1:446)  433  0.00 0.22 0.00  MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1        1   446 (17)  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   (92)   448     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  222 nodes

 113 str. conn. components

Path
    1  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   540 
  119    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1    26 
  127  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   414 
  131    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1    38 
  135  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   406 
  151    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1    58 
  155  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   386 
  159    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1    66 
  163  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   378 
  171    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1    78 
  203  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   338 
  207    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1   114 
  215  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   326 
  219    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1   126 
  223  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   318 
  227    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1   134 
  239  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   302 
  251    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1   158 
  255  C MoSU002R_E07_BE498418At01P005C04C101R1_051.ab1   286 
  267    MoSU002F_E07_BE498418At01P005C04C101F1_051.ab1   174 
Contig length: old 556, new 556

Contig length: old 556, new 556
New start: 0