No. words: 1014; after pruning: 988


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    7    0.0 7.2 (1,1:457)  433  0.22 0.22 0.00  MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1        9   458 (18)  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   (87)   451     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 7       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  220 nodes

 112 str. conn. components

Path
    1  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   538 
  119    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1    39 
  127  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   412 
  131    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1    51 
  135  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   404 
  139    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1    59 
  147  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   392 
  159    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1    79 
  163  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   376 
  167    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1    87 
  199  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   340 
  211    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1   131 
  239  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   300 
  251    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1   171 
  255  C MoSU002R_F07_BE498418At02P005C04C101R1_059.ab1   284 
  263    MoSU002F_F07_BE498418At02P005C04C101F1_059.ab1   183 
Contig length: old 556, new 556

Contig length: old 556, new 556
New start: 0