No. words: 1045; after pruning: 1019


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 6.7 (1,1:457)  430  0.66 0.00 0.22  MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1        5   458 (10)  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   (124)   453     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  218 nodes

 111 str. conn. components

Path
    1  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   577 
  264    MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1   144 
  268  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   310 
  280    MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1   160 
  284  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   294 
  304    MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1   184 
  368  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   210 
  384    MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1   264 
  392  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   186 
  396    MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1   276 
  400  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   178 
  412    MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1   292 
  416  C MoSU002R_C08_BE498418Ld05P005C04C101R1_054.ab1   162 
  571    MoSU002F_C08_BE498418Ld05P005C04C101F1_054.ab1   452 
Contig length: old 587, new 587

Contig length: old 587, new 587
New start: 0