No. words: 486; after pruning: 460


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 1.4 (1,1:208)  187  0.00 0.48 0.97  MoSU016F_D10_BE498418Td06P023G04P005C101F1_074.ab1        1   207 (35)  C MoSU016R_D10_BE498418Td06P023G04P005C101R1_074.ab1   (35)   209     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  96 nodes

 50 str. conn. components

Path
    1  C MoSU016R_D10_BE498418Td06P023G04P005C101R1_074.ab1   244 
   66    MoSU016F_D10_BE498418Td06P023G04P005C101F1_074.ab1    30 
   74  C MoSU016R_D10_BE498418Td06P023G04P005C101R1_074.ab1   171 
   78    MoSU016F_D10_BE498418Td06P023G04P005C101F1_074.ab1    42 
  118  C MoSU016R_D10_BE498418Td06P023G04P005C101R1_074.ab1   127 
  122    MoSU016F_D10_BE498418Td06P023G04P005C101F1_074.ab1    86 
  138  C MoSU016R_D10_BE498418Td06P023G04P005C101R1_074.ab1   107 
  142    MoSU016F_D10_BE498418Td06P023G04P005C101F1_074.ab1   106 
  154  C MoSU016R_D10_BE498418Td06P023G04P005C101R1_074.ab1    91 
  158    MoSU016F_D10_BE498418Td06P023G04P005C101F1_074.ab1   122 
Contig length: old 277, new 278

Contig length: old 278, new 278
New start: 0