No. words: 493; after pruning: 467


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.1 -0.1 (1,1:204)  182  0.00 0.98 0.98  MoSU016F_F10_BE498418Td08P023G04P005C101F1_070.ab1        1   205 (47)  C MoSU016R_F10_BE498418Td08P023G04P005C101R1_070.ab1   (35)   206     2 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  90 nodes

 47 str. conn. components

Path
    1  C MoSU016R_F10_BE498418Td08P023G04P005C101R1_070.ab1   241 
   65    MoSU016F_F10_BE498418Td08P023G04P005C101F1_070.ab1    29 
   73  C MoSU016R_F10_BE498418Td08P023G04P005C101R1_070.ab1   169 
   77    MoSU016F_F10_BE498418Td08P023G04P005C101F1_070.ab1    41 
   85  C MoSU016R_F10_BE498418Td08P023G04P005C101R1_070.ab1   157 
  108    MoSU016F_F10_BE498418Td08P023G04P005C101F1_070.ab1    71 
  116  C MoSU016R_F10_BE498418Td08P023G04P005C101R1_070.ab1   126 
  120    MoSU016F_F10_BE498418Td08P023G04P005C101F1_070.ab1    83 
  132  C MoSU016R_F10_BE498418Td08P023G04P005C101R1_070.ab1   110 
  140    MoSU016F_F10_BE498418Td08P023G04P005C101F1_070.ab1   103 
  212  C MoSU016R_F10_BE498418Td08P023G04P005C101R1_070.ab1    30 
  216    MoSU016F_F10_BE498418Td08P023G04P005C101F1_070.ab1   179 
Contig length: old 288, new 289

Contig length: old 289, new 289
New start: 0