No. words: 722; after pruning: 696


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    2    0.0 6.9 (1,1:352)  318  0.00 0.00 0.00  MoSU009F_E01_BE499248At01P015C01P015C071F1_007.ab1       30   353 (43)  C MoSU009R_E01_BE499248At01P015C01P015C071R1_007.ab1   (2)   324     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 2       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  164 nodes

 84 str. conn. components

Path
    1    MoSU009F_E01_BE499248At01P015C01P015C071F1_007.ab1     1 
   66  C MoSU009R_E01_BE499248At01P015C01P015C071R1_007.ab1   288 
   70    MoSU009F_E01_BE499248At01P015C01P015C071F1_007.ab1    70 
   74  C MoSU009R_E01_BE499248At01P015C01P015C071R1_007.ab1   280 
   82    MoSU009F_E01_BE499248At01P015C01P015C071F1_007.ab1    82 
   86  C MoSU009R_E01_BE499248At01P015C01P015C071R1_007.ab1   268 
  102    MoSU009F_E01_BE499248At01P015C01P015C071F1_007.ab1   102 
  306  C MoSU009R_E01_BE499248At01P015C01P015C071R1_007.ab1    48 
  310    MoSU009F_E01_BE499248At01P015C01P015C071F1_007.ab1   310 
Contig length: old 396, new 396

Contig length: old 396, new 396
New start: 0