No. words: 1014; after pruning: 974


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.0 (1,1:342)  312  0.58 0.58 0.29  MoSU009F_G01_BE499248Ld01P015C01P015C071F1_003.ab1        1   343 (156)  C MoSU009R_G01_BE499248Ld01P015C01P015C071R1_003.ab1   (171)   344     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  158 nodes

 81 str. conn. components

Path
    1  C MoSU009R_G01_BE499248Ld01P015C01P015C071R1_003.ab1   515 
  421    MoSU009F_G01_BE499248Ld01P015C01P015C071F1_003.ab1   248 
  457  C MoSU009R_G01_BE499248Ld01P015C01P015C071R1_003.ab1    59 
  465    MoSU009F_G01_BE499248Ld01P015C01P015C071F1_003.ab1   292 
  479  C MoSU009R_G01_BE499248Ld01P015C01P015C071R1_003.ab1    38 
  494    MoSU009F_G01_BE499248Ld01P015C01P015C071F1_003.ab1   321 
Contig length: old 671, new 672

Contig length: old 672, new 672
New start: 0