No. words: 1013; after pruning: 987


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.1 (1,1:341)  320  0.00 0.59 0.00  MoSU009F_H01_BE499248Ld02P015C01P015C071F1_001.ab1        1   341 (155)  C MoSU009R_H01_BE499248Ld02P015C01P015C071R1_001.ab1   (174)   343     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  166 nodes

 85 str. conn. components

Path
    1  C MoSU009R_H01_BE499248Ld02P015C01P015C071R1_001.ab1   517 
  213    MoSU009F_H01_BE499248Ld02P015C01P015C071F1_001.ab1    37 
  217  C MoSU009R_H01_BE499248Ld02P015C01P015C071R1_001.ab1   301 
  365    MoSU009F_H01_BE499248Ld02P015C01P015C071F1_001.ab1   189 
  409  C MoSU009R_H01_BE499248Ld02P015C01P015C071R1_001.ab1   109 
  421    MoSU009F_H01_BE499248Ld02P015C01P015C071F1_001.ab1   245 
  461  C MoSU009R_H01_BE499248Ld02P015C01P015C071R1_001.ab1    57 
  469    MoSU009F_H01_BE499248Ld02P015C01P015C071F1_001.ab1   293 
  489  C MoSU009R_H01_BE499248Ld02P015C01P015C071R1_001.ab1    29 
  493    MoSU009F_H01_BE499248Ld02P015C01P015C071F1_001.ab1   317 
Contig length: old 671, new 672

Contig length: old 672, new 672
New start: 0