No. words: 1018; after pruning: 978


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:345)  330  0.29 0.29 0.00  MoSU009F_A02_BE499248Ld03P015C01P015C071F1_016.ab1        1   346 (151)  C MoSU009R_A02_BE499248Ld03P015C01P015C071R1_016.ab1   (174)   347     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  168 nodes

 86 str. conn. components

Path
    1  C MoSU009R_A02_BE499248Ld03P015C01P015C071R1_016.ab1   521 
  423    MoSU009F_A02_BE499248Ld03P015C01P015C071F1_016.ab1   248 
  463  C MoSU009R_A02_BE499248Ld03P015C01P015C071R1_016.ab1    59 
  471    MoSU009F_A02_BE499248Ld03P015C01P015C071F1_016.ab1   296 
  479  C MoSU009R_A02_BE499248Ld03P015C01P015C071R1_016.ab1    43 
  497    MoSU009F_A02_BE499248Ld03P015C01P015C071F1_016.ab1   322 
Contig length: old 672, new 672

Contig length: old 672, new 672
New start: 0