No. words: 1014; after pruning: 974


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.3 (1,1:348)  334  0.29 0.29 0.00  MoSU009F_C02_BE499248Ld05P015C01P015C071F1_012.ab1        1   349 (163)  C MoSU009R_C02_BE499248Ld05P015C01P015C071R1_012.ab1   (152)   350     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  172 nodes

 88 str. conn. components

Path
    1  C MoSU009R_C02_BE499248Ld05P015C01P015C071R1_012.ab1   502 
  402    MoSU009F_C02_BE499248Ld05P015C01P015C071F1_012.ab1   249 
  442  C MoSU009R_C02_BE499248Ld05P015C01P015C071R1_012.ab1    61 
  450    MoSU009F_C02_BE499248Ld05P015C01P015C071F1_012.ab1   297 
  462  C MoSU009R_C02_BE499248Ld05P015C01P015C071R1_012.ab1    41 
  478    MoSU009F_C02_BE499248Ld05P015C01P015C071F1_012.ab1   325 
Contig length: old 665, new 665

Contig length: old 665, new 665
New start: 0