No. words: 1020; after pruning: 980


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.0 (1,1:346)  323  0.58 0.29 0.29  MoSU009F_G02_BE499248Ld09P015C01P015C071F1_004.ab1        1   347 (156)  C MoSU009R_G02_BE499248Ld09P015C01P015C071R1_004.ab1   (170)   347     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  162 nodes

 83 str. conn. components

Path
    1  C MoSU009R_G02_BE499248Ld09P015C01P015C071R1_004.ab1   517 
  370    MoSU009F_G02_BE499248Ld09P015C01P015C071F1_004.ab1   199 
  460  C MoSU009R_G02_BE499248Ld09P015C01P015C071R1_004.ab1    58 
  468    MoSU009F_G02_BE499248Ld09P015C01P015C071F1_004.ab1   297 
  481  C MoSU009R_G02_BE499248Ld09P015C01P015C071R1_004.ab1    38 
  496    MoSU009F_G02_BE499248Ld09P015C01P015C071F1_004.ab1   325 
Contig length: old 673, new 674

Contig length: old 674, new 674
New start: 0