No. words: 1572; after pruning: 1532


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:1024)  506  0.55 0.55 0.37  MoSU004F_G09_BE500615Ld01P005D05D111F1_068.ab1      170   715 (0)  C MoSU004R_G09_BE500615Ld01P005D05D111R1_068.ab1   (0)   857   311 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  252 nodes

 128 str. conn. components

Path
    1    MoSU004F_G09_BE500615Ld01P005D05D111F1_068.ab1     1 
  448  C MoSU004R_G09_BE500615Ld01P005D05D111R1_068.ab1   578 
  452    MoSU004F_G09_BE500615Ld01P005D05D111F1_068.ab1   452 
  504  C MoSU004R_G09_BE500615Ld01P005D05D111R1_068.ab1   522 
  508    MoSU004F_G09_BE500615Ld01P005D05D111F1_068.ab1   508 
  512  C MoSU004R_G09_BE500615Ld01P005D05D111R1_068.ab1   514 
  540    MoSU004F_G09_BE500615Ld01P005D05D111F1_068.ab1   540 
  548  C MoSU004R_G09_BE500615Ld01P005D05D111R1_068.ab1   478 
Contig length: old 1025, new 1025

Contig length: old 1025, new 1025
New start: 0