No. words: 1305; after pruning: 1279


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.5 (1,1:1008)  290  0.00 0.00 0.00  MoSU004F_H09_BE500615Ld02P005D05D111F1_076.ab1      154   449 (0)  C MoSU004R_H09_BE500615Ld02P005D05D111R1_076.ab1   (0)   856   561 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  150 nodes

 77 str. conn. components

Path
    1    MoSU004F_H09_BE500615Ld02P005D05D111F1_076.ab1     1 
  325  C MoSU004R_H09_BE500615Ld02P005D05D111R1_076.ab1   685 
  333    MoSU004F_H09_BE500615Ld02P005D05D111F1_076.ab1   333 
  349  C MoSU004R_H09_BE500615Ld02P005D05D111R1_076.ab1   661 
  353    MoSU004F_H09_BE500615Ld02P005D05D111F1_076.ab1   353 
  361  C MoSU004R_H09_BE500615Ld02P005D05D111R1_076.ab1   649 
  369    MoSU004F_H09_BE500615Ld02P005D05D111F1_076.ab1   369 
  373  C MoSU004R_H09_BE500615Ld02P005D05D111R1_076.ab1   637 
Contig length: old 1009, new 1009

Contig length: old 1009, new 1009
New start: 0