No. words: 1393; after pruning: 1367


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 13.6 (1,1:663)  625  0.30 0.45 0.15  MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1        4   664 (34)  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1   (32)   663     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  314 nodes

 159 str. conn. components

Path
    1  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1   695 
   36    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1     7 
  156  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1   538 
  160    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1   131 
  184  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1   510 
  188    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1   159 
  228  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1   466 
  236    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1   207 
  264  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1   430 
  276    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1   247 
  300  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1   394 
  604    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1   575 
  620  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1    74 
  640    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1   611 
  671  C MoSU032R_G11_BE500615Sn25P024C05P005D111R1_083.ab1    22 
  679    MoSU032F_G11_BE500615Sn25P024C05P005D111F1_083.ab1   650 
Contig length: old 729, new 727

Contig length: old 727, new 729
New start: 0 
I Change at: 55; seg lengths: entry 1, contig 0
I Change at: 90; seg lengths: entry 1, contig 0