No. words: 1416; after pruning: 1390


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:662)  629  0.15 0.45 0.15  MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1        1   662 (46)  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   (44)   664     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  320 nodes

 162 str. conn. components

Path
    1  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   708 
   85    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1    39 
   97  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   612 
  137    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1    91 
  141  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   568 
  145    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1    99 
  149  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   560 
  205    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1   159 
  209  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   500 
  481    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1   435 
  485  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   224 
  553    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1   507 
  561  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1   148 
  621    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1   575 
  629  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1    80 
  633    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1   587 
  653  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1    56 
  657    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1   611 
  692  C MoSU032R_C12_BE500615Sn28P024C05P005D111R1_092.ab1    16 
  696    MoSU032F_C12_BE500615Sn28P024C05P005D111F1_092.ab1   650 
Contig length: old 753, new 754

Contig length: old 754, new 754
New start: 0