No. words: 1314; after pruning: 1288


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 12.8 (1,1:662)  615  0.16 0.31 0.00  MoSU032F_C10_BE500615Ta13P024C05P005D111F1_076.ab1        6   645 (0)  C MoSU032R_C10_BE500615Ta13P024C05P005D111R1_076.ab1   (10)   659    18 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1    MoSU032F_C10_BE500615Ta13P024C05P005D111F1_076.ab1     1 
  105  C MoSU032R_C10_BE500615Ta13P024C05P005D111R1_076.ab1   558 
  109    MoSU032F_C10_BE500615Ta13P024C05P005D111F1_076.ab1   109 
  153  C MoSU032R_C10_BE500615Ta13P024C05P005D111R1_076.ab1   510 
  157    MoSU032F_C10_BE500615Ta13P024C05P005D111F1_076.ab1   157 
  201  C MoSU032R_C10_BE500615Ta13P024C05P005D111R1_076.ab1   462 
  205    MoSU032F_C10_BE500615Ta13P024C05P005D111F1_076.ab1   205 
  229  C MoSU032R_C10_BE500615Ta13P024C05P005D111R1_076.ab1   434 
  233    MoSU032F_C10_BE500615Ta13P024C05P005D111F1_076.ab1   233 
  269  C MoSU032R_C10_BE500615Ta13P024C05P005D111R1_076.ab1   394 
  293    MoSU032F_C10_BE500615Ta13P024C05P005D111F1_076.ab1   293 
  301  C MoSU032R_C10_BE500615Ta13P024C05P005D111R1_076.ab1   362 
Contig length: old 669, new 662

Contig length: old 662, new 664
New start: 0 
I Change at: 25; seg lengths: entry 1, contig 0
I Change at: 60; seg lengths: entry 1, contig 0