No. words: 1543; after pruning: 1517


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.9 (1,1:904)  621  0.16 0.00 0.00  MoSU032F_F08_BE500615Ta14P005D05P024E061F1_054.ab1      189   826 (0)  C MoSU032R_F08_BE500615Ta14P005D05P024E061R1_054.ab1   (0)   717    80 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  316 nodes

 160 str. conn. components

Path
    1    MoSU032F_F08_BE500615Ta14P005D05P024E061F1_054.ab1     1 
  544  C MoSU032R_F08_BE500615Ta14P005D05P024E061R1_054.ab1   362 
  556    MoSU032F_F08_BE500615Ta14P005D05P024E061F1_054.ab1   556 
  564  C MoSU032R_F08_BE500615Ta14P005D05P024E061R1_054.ab1   342 
  572    MoSU032F_F08_BE500615Ta14P005D05P024E061F1_054.ab1   572 
  576  C MoSU032R_F08_BE500615Ta14P005D05P024E061R1_054.ab1   330 
  616    MoSU032F_F08_BE500615Ta14P005D05P024E061F1_054.ab1   616 
  624  C MoSU032R_F08_BE500615Ta14P005D05P024E061R1_054.ab1   282 
Contig length: old 905, new 905

Contig length: old 905, new 905
New start: 0