No. words: 1411; after pruning: 1385


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 13.1 (1,1:652)  622  0.00 0.46 0.00  MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1        1   648 (48)  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1   (60)   655     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  318 nodes

 161 str. conn. components

Path
    1  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1   715 
   64    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1     4 
   72  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1   644 
   89    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1    28 
  105  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1   611 
  592    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   530 
  596  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1   120 
  616    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   554 
  620  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1    96 
  628    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   566 
  632  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1    84 
  636    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   574 
  644  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1    72 
  648    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   586 
  656  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1    60 
  672    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   610 
  680  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1    35 
  684    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   622 
  696  C MoSU032R_E11_BE500615Ta23P024C05P005D111R1_087.ab1    19 
  704    MoSU032F_E11_BE500615Ta23P024C05P005D111F1_087.ab1   642 
Contig length: old 758, new 758

Contig length: old 758, new 758
New start: 0