No. words: 1433; after pruning: 1407


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.2 (1,1:919)  498  0.39 0.00 0.00  MoSU032F_B07_BE500615Td02P005D05P024E061F1_061.ab1      207   719 (0)  C MoSU032R_B07_BE500615Td02P005D05P024E061R1_061.ab1   (0)   714   202 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  250 nodes

 127 str. conn. components

Path
    1    MoSU032F_B07_BE500615Td02P005D05P024E061F1_061.ab1     1 
  427  C MoSU032R_B07_BE500615Td02P005D05P024E061R1_061.ab1   494 
  443    MoSU032F_B07_BE500615Td02P005D05P024E061F1_061.ab1   443 
  487  C MoSU032R_B07_BE500615Td02P005D05P024E061R1_061.ab1   434 
  511    MoSU032F_B07_BE500615Td02P005D05P024E061F1_061.ab1   511 
  515  C MoSU032R_B07_BE500615Td02P005D05P024E061R1_061.ab1   406 
  523    MoSU032F_B07_BE500615Td02P005D05P024E061F1_061.ab1   523 
  531  C MoSU032R_B07_BE500615Td02P005D05P024E061R1_061.ab1   390 
  535    MoSU032F_B07_BE500615Td02P005D05P024E061F1_061.ab1   535 
  539  C MoSU032R_B07_BE500615Td02P005D05P024E061R1_061.ab1   382 
Contig length: old 920, new 920

Contig length: old 920, new 920
New start: 0