No. words: 1649; after pruning: 1623


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.6 (1,1:939)  688  0.14 0.00 0.00  MoSU032F_D07_BE500615Td04P005D05P024E061F1_057.ab1      154   862 (0)  C MoSU032R_D07_BE500615Td04P005D05P024E061R1_057.ab1   (0)   787    79 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  352 nodes

 178 str. conn. components

Path
    1    MoSU032F_D07_BE500615Td04P005D05P024E061F1_057.ab1     1 
  374  C MoSU032R_D07_BE500615Td04P005D05P024E061R1_057.ab1   567 
  386    MoSU032F_D07_BE500615Td04P005D05P024E061F1_057.ab1   386 
  430  C MoSU032R_D07_BE500615Td04P005D05P024E061R1_057.ab1   511 
  434    MoSU032F_D07_BE500615Td04P005D05P024E061F1_057.ab1   434 
  510  C MoSU032R_D07_BE500615Td04P005D05P024E061R1_057.ab1   431 
Contig length: old 940, new 940

Contig length: old 940, new 940
New start: 0