No. words: 1311; after pruning: 1285


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 6.6 (1,1:917)  380  0.25 0.00 0.25  MoSU032F_B08_BE500615Td10P005D05P024E061F1_062.ab1      332   724 (0)  C MoSU032R_B08_BE500615Td10P005D05P024E061R1_062.ab1   (0)   587   196 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  192 nodes

 98 str. conn. components

Path
    1    MoSU032F_B08_BE500615Td10P005D05P024E061F1_062.ab1     1 
  555  C MoSU032R_B08_BE500615Td10P005D05P024E061R1_062.ab1   364 
  563    MoSU032F_B08_BE500615Td10P005D05P024E061F1_062.ab1   563 
  575  C MoSU032R_B08_BE500615Td10P005D05P024E061R1_062.ab1   344 
  583    MoSU032F_B08_BE500615Td10P005D05P024E061F1_062.ab1   583 
  591  C MoSU032R_B08_BE500615Td10P005D05P024E061R1_062.ab1   328 
  603    MoSU032F_B08_BE500615Td10P005D05P024E061F1_062.ab1   603 
  611  C MoSU032R_B08_BE500615Td10P005D05P024E061R1_062.ab1   308 
  623    MoSU032F_B08_BE500615Td10P005D05P024E061F1_062.ab1   623 
  627  C MoSU032R_B08_BE500615Td10P005D05P024E061R1_062.ab1   292 
Contig length: old 918, new 918

Contig length: old 918, new 918
New start: 0