No. words: 1322; after pruning: 1282


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.4 (1,1:621)  507  4.98 0.00 0.32  MoSU035F_C01_BE518357As01P019G03P019G091F1_011.ab1        1   623 (17)  C MoSU035R_C01_BE518357As01P019G03P019G091R1_011.ab1   (61)   621     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  216 nodes

 110 str. conn. components

Path
    1  C MoSU035R_C01_BE518357As01P019G03P019G091R1_011.ab1   682 
  675    MoSU035F_C01_BE518357As01P019G03P019G091F1_011.ab1   616 
Contig length: old 700, new 699

Contig length: old 699, new 701
New start: 0 
S Change at: 68; seg lengths: entry 1, contig 1
I Change at: 671; seg lengths: entry 3, contig 1