No. words: 1326; after pruning: 1286


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.1 (1,1:626)  547  3.51 0.00 0.16  MoSU035F_E01_BE518357At01P019G03P019G091F1_007.ab1        1   627 (34)  C MoSU035R_E01_BE518357At01P019G03P019G091R1_007.ab1   (39)   626     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  246 nodes

 125 str. conn. components

Path
    1  C MoSU035R_E01_BE518357At01P019G03P019G091R1_007.ab1   665 
  659    MoSU035F_E01_BE518357At01P019G03P019G091F1_007.ab1   621 
Contig length: old 699, new 699

Contig length: old 699, new 700
New start: 0 
S Change at: 58; seg lengths: entry 1, contig 1
I Change at: 650; seg lengths: entry 1, contig 0