No. words: 1586; after pruning: 1532


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.6 (1,1:642)  571  2.16 0.00 0.77  MoSU035F_G01_BE518357Ld02P019G03P019G091F1_003.ab1        1   647 (139)  C MoSU035R_G01_BE518357Ld02P019G03P019G091R1_003.ab1   (158)   642     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  280 nodes

 142 str. conn. components

Path
    1  C MoSU035R_G01_BE518357Ld02P019G03P019G091R1_003.ab1   800 
  747    MoSU035F_G01_BE518357Ld02P019G03P019G091F1_003.ab1   589 
  758  C MoSU035R_G01_BE518357Ld02P019G03P019G091R1_003.ab1    44 
  784    MoSU035F_G01_BE518357Ld02P019G03P019G091F1_003.ab1   628 
Contig length: old 943, new 942

Contig length: old 942, new 943
New start: 0 
S Change at: 62; seg lengths: entry 1, contig 1
S Change at: 181; seg lengths: entry 1, contig 1
I Change at: 777; seg lengths: entry 1, contig 0