No. words: 1096; after pruning: 1056


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -4.8 -4.8 (1,1:409)  159 14.53 0.00 0.34  MoSU035F_H01_BE518357Ld03P019G03P019G091F1_001.ab1        1   296 (0)  C MoSU035R_H01_BE518357Ld03P019G03P019G091R1_001.ab1   (391)   409   115 *
  Worst pair: offset 1 
LLR breakdown: discreps: -10.5 (<20 part: -10.5 (#=44), >20:0.0 (#=0); in HQ: -10.5, out HQ 0.0), match: 5.6  total: -4.9  159 14.53 0.00 0.34  MoSU035F_H01_BE518357Ld03P019G03P019G091F1_001.ab1        1   296 (0)  C MoSU035R_H01_BE518357Ld03P019G03P019G091R1_001.ab1   (391)   409   115 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-4.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  52 nodes

 28 str. conn. components

Path
    1  C MoSU035R_H01_BE518357Ld03P019G03P019G091R1_001.ab1   800 
Contig length: old 800, new 800

Contig length: old 800, new 800
New start: 0 
S Change at: 178; seg lengths: entry 1, contig 1