No. words: 1515; after pruning: 1475


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.2 (1,1:572)  512  3.14 0.00 0.00  MoSU035F_A02_BE518357Ld04P019G03P019G091F1_016.ab1        1   573 (153)  C MoSU035R_A02_BE518357Ld04P019G03P019G091R1_016.ab1   (216)   573     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  236 nodes

 120 str. conn. components

Path
    1  C MoSU035R_A02_BE518357Ld04P019G03P019G091R1_016.ab1   789 
  777    MoSU035F_A02_BE518357Ld04P019G03P019G091F1_016.ab1   561 
Contig length: old 942, new 942

Contig length: old 942, new 942
New start: 0 
S Change at: 181; seg lengths: entry 1, contig 1
S Change at: 784; seg lengths: entry 1, contig 1