No. words: 1586; after pruning: 1532


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.1 (1,1:642)  586  1.71 0.00 0.47  MoSU035F_C02_BE518357Ld06P019G03P019G091F1_012.ab1        1   644 (138)  C MoSU035R_C02_BE518357Ld06P019G03P019G091R1_012.ab1   (162)   642     2 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  282 nodes

 143 str. conn. components

Path
    1  C MoSU035R_C02_BE518357Ld06P019G03P019G091R1_012.ab1   804 
  774    MoSU035F_C02_BE518357Ld06P019G03P019G091F1_012.ab1   613 
  778  C MoSU035R_C02_BE518357Ld06P019G03P019G091R1_012.ab1    27 
  786    MoSU035F_C02_BE518357Ld06P019G03P019G091F1_012.ab1   625 
Contig length: old 943, new 943

Contig length: old 943, new 944
New start: 0 
S Change at: 62; seg lengths: entry 1, contig 1
S Change at: 181; seg lengths: entry 1, contig 1
I Change at: 773; seg lengths: entry 1, contig 0