No. words: 1570; after pruning: 1530


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.2 (1,1:626)  555  3.03 0.00 0.16  MoSU035F_G02_BE518357Ld10P019G03P019G091F1_004.ab1        1   627 (155)  C MoSU035R_G02_BE518357Ld10P019G03P019G091R1_004.ab1   (162)   626     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  264 nodes

 134 str. conn. components

Path
    1  C MoSU035R_G02_BE518357Ld10P019G03P019G091R1_004.ab1   788 
  747    MoSU035F_G02_BE518357Ld10P019G03P019G091F1_004.ab1   585 
  757  C MoSU035R_G02_BE518357Ld10P019G03P019G091R1_004.ab1    32 
  777    MoSU035F_G02_BE518357Ld10P019G03P019G091F1_004.ab1   616 
  781  C MoSU035R_G02_BE518357Ld10P019G03P019G091R1_004.ab1     8 
  785    MoSU035F_G02_BE518357Ld10P019G03P019G091F1_004.ab1   624 
Contig length: old 943, new 943

Contig length: old 943, new 944
New start: 0 
S Change at: 179; seg lengths: entry 3, contig 3
I Change at: 774; seg lengths: entry 1, contig 0