No. words: 1514; after pruning: 1474


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 7.7 (1,1:613)  536  3.25 0.00 0.33  MoSU035F_H02_BE518357Ld11P019G03P019G091F1_002.ab1        1   615 (114)  C MoSU035R_H02_BE518357Ld11P019G03P019G091R1_002.ab1   (172)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  254 nodes

 129 str. conn. components

Path
    1  C MoSU035R_H02_BE518357Ld11P019G03P019G091R1_002.ab1   785 
  741    MoSU035F_H02_BE518357Ld11P019G03P019G091F1_002.ab1   569 
  755  C MoSU035R_H02_BE518357Ld11P019G03P019G091R1_002.ab1    32 
  763    MoSU035F_H02_BE518357Ld11P019G03P019G091F1_002.ab1   591 
Contig length: old 900, new 901

Contig length: old 901, new 901
New start: 0 
S Change at: 179; seg lengths: entry 1, contig 1
S Change at: 708; seg lengths: entry 2, contig 2
S Change at: 767; seg lengths: entry 1, contig 1
S Change at: 782; seg lengths: entry 1, contig 1