No. words: 1298; after pruning: 1258


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 4.6 (1,1:598)  511  3.53 0.00 0.34  MoSU035F_B01_BE518357Tu02P019G03P019G091F1_013.ab1        5   599 (36)  C MoSU035R_B01_BE518357Tu02P019G03P019G091R1_013.ab1   (70)   593     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  232 nodes

 118 str. conn. components

Path
    1  C MoSU035R_B01_BE518357Tu02P019G03P019G091R1_013.ab1   663 
  637    MoSU035F_B01_BE518357Tu02P019G03P019G091F1_013.ab1   572 
Contig length: old 699, new 700

Contig length: old 700, new 700
New start: 0 
S Change at: 72; seg lengths: entry 1, contig 1
S Change at: 185; seg lengths: entry 1, contig 1
S Change at: 644; seg lengths: entry 1, contig 1
S Change at: 658; seg lengths: entry 1, contig 1