No. words: 1327; after pruning: 1301


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.9 (1,1:597)  583  0.00 0.00 0.00  MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1        4   598 (92)  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1   (42)   595     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1   637 
   46    MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1     7 
  538  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1   100 
  542    MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1   503 
  546  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1    92 
  554    MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1   515 
  574  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1    64 
  578    MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1   539 
  582  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1    56 
  594    MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1   555 
  610  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1    28 
  614    MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1   575 
  618  C MoSU008R_D01_BE590476At01P005C01C071R1_009.ab1    20 
  626    MoSU008F_D01_BE590476At01P005C01C071F1_009.ab1   587 
Contig length: old 729, new 729

Contig length: old 729, new 729
New start: 0