No. words: 1518; after pruning: 1492


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.3 (1,1:617)  598  0.00 0.00 0.48  MoSU008F_F01_BE590476Ld01P005C01C071F1_005.ab1        1   620 (120)  C MoSU008R_F01_BE590476Ld01P005C01C071R1_005.ab1   (161)   617     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C MoSU008R_F01_BE590476Ld01P005C01C071R1_005.ab1   778 
  205    MoSU008F_F01_BE590476Ld01P005C01C071F1_005.ab1    44 
  237  C MoSU008R_F01_BE590476Ld01P005C01C071R1_005.ab1   542 
  253    MoSU008F_F01_BE590476Ld01P005C01C071F1_005.ab1    92 
  697  C MoSU008R_F01_BE590476Ld01P005C01C071R1_005.ab1    82 
  717    MoSU008F_F01_BE590476Ld01P005C01C071F1_005.ab1   556 
  721  C MoSU008R_F01_BE590476Ld01P005C01C071R1_005.ab1    58 
  737    MoSU008F_F01_BE590476Ld01P005C01C071F1_005.ab1   576 
  741  C MoSU008R_F01_BE590476Ld01P005C01C071R1_005.ab1    38 
  749    MoSU008F_F01_BE590476Ld01P005C01C071F1_005.ab1   588 
Contig length: old 900, new 901

Contig length: old 901, new 901
New start: 0