No. words: 1333; after pruning: 1307


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.7 (1,1:613)  599  0.00 0.00 0.33  MoSU008F_H01_BE590476Ld03P005C01C071F1_001.ab1        1   615 (78)  C MoSU008R_H01_BE590476Ld03P005C01C071R1_001.ab1   (27)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU008R_H01_BE590476Ld03P005C01C071R1_001.ab1   640 
   31    MoSU008F_H01_BE590476Ld03P005C01C071F1_001.ab1     4 
  407  C MoSU008R_H01_BE590476Ld03P005C01C071R1_001.ab1   234 
  431    MoSU008F_H01_BE590476Ld03P005C01C071F1_001.ab1   404 
  475  C MoSU008R_H01_BE590476Ld03P005C01C071R1_001.ab1   166 
  491    MoSU008F_H01_BE590476Ld03P005C01C071F1_001.ab1   464 
  495  C MoSU008R_H01_BE590476Ld03P005C01C071R1_001.ab1   146 
  527    MoSU008F_H01_BE590476Ld03P005C01C071F1_001.ab1   500 
  531  C MoSU008R_H01_BE590476Ld03P005C01C071R1_001.ab1   110 
  591    MoSU008F_H01_BE590476Ld03P005C01C071F1_001.ab1   564 
  600  C MoSU008R_H01_BE590476Ld03P005C01C071R1_001.ab1    42 
  620    MoSU008F_H01_BE590476Ld03P005C01C071F1_001.ab1   593 
Contig length: old 719, new 720

Contig length: old 720, new 720
New start: 0