No. words: 1520; after pruning: 1494


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.4 (1,1:619)  603  0.32 0.00 0.16  MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1        1   620 (151)  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1   (130)   619     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1   749 
  175    MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1    45 
  187  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1   563 
  191    MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1    61 
  203  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1   547 
  219    MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1    89 
  223  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1   527 
  239    MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1   109 
  271  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1   479 
  291    MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1   161 
  663  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1    87 
  703    MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1   573 
  707  C MoSU008R_A02_BE590476Ld04P005C01C071R1_016.ab1    43 
  719    MoSU008F_A02_BE590476Ld04P005C01C071F1_016.ab1   589 
Contig length: old 900, new 901

Contig length: old 901, new 901
New start: 0