No. words: 1589; after pruning: 1549


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.1 (1,1:656)  646  0.00 0.15 0.00  MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1        1   657 (128)  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   (146)   658     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  328 nodes

 166 str. conn. components

Path
    1  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   804 
  163    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1    16 
  167  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   638 
  187    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1    40 
  219  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   586 
  223    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1    76 
  235  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   570 
  243    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1    96 
  251  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   554 
  263    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   116 
  271  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   534 
  275    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   128 
  287  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   518 
  331    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   184 
  339  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   466 
  359    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   212 
  375  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   430 
  407    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   260 
  523  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   282 
  531    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   384 
  579  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   226 
  595    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   448 
  655  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1   150 
  663    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   516 
  711  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1    94 
  715    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   568 
  731  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1    74 
  751    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   604 
  759  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1    46 
  767    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   620 
  771  C MoSU008R_C02_BE590476Ld06P005C01C071R1_012.ab1    34 
  779    MoSU008F_C02_BE590476Ld06P005C01C071F1_012.ab1   632 
Contig length: old 932, new 932

Contig length: old 932, new 932
New start: 0 
S Change at: 60; seg lengths: entry 1, contig 1