No. words: 1560; after pruning: 1520


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:618)  603  0.00 0.00 0.32  MoSU008F_D02_BE590476Ld07P005C01C071F1_010.ab1        1   620 (159)  C MoSU008R_D02_BE590476Ld07P005C01C071R1_010.ab1   (163)   618     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU008R_D02_BE590476Ld07P005C01C071R1_010.ab1   781 
  207    MoSU008F_D02_BE590476Ld07P005C01C071F1_010.ab1    44 
  239  C MoSU008R_D02_BE590476Ld07P005C01C071R1_010.ab1   543 
  323    MoSU008F_D02_BE590476Ld07P005C01C071F1_010.ab1   160 
  331  C MoSU008R_D02_BE590476Ld07P005C01C071R1_010.ab1   451 
  339    MoSU008F_D02_BE590476Ld07P005C01C071F1_010.ab1   176 
  699  C MoSU008R_D02_BE590476Ld07P005C01C071R1_010.ab1    83 
  719    MoSU008F_D02_BE590476Ld07P005C01C071F1_010.ab1   556 
  723  C MoSU008R_D02_BE590476Ld07P005C01C071R1_010.ab1    59 
  731    MoSU008F_D02_BE590476Ld07P005C01C071F1_010.ab1   568 
  743  C MoSU008R_D02_BE590476Ld07P005C01C071R1_010.ab1    39 
  751    MoSU008F_D02_BE590476Ld07P005C01C071F1_010.ab1   588 
Contig length: old 941, new 942

Contig length: old 942, new 942
New start: 0 
S Change at: 62; seg lengths: entry 1, contig 1