No. words: 1403; after pruning: 1377


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.5 (1,1:612)  604  0.16 0.00 0.00  MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1        1   613 (86)  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1   (91)   613     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1   704 
   95    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1     4 
  107  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1   598 
  111    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1    20 
  119  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1   586 
  131    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1    40 
  163  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1   542 
  167    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1    76 
  503  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1   202 
  591    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1   500 
  599  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1   106 
  655    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1   564 
  663  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1    42 
  675    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1   584 
  691  C MoSU008R_E02_BE590476Ld08P005C01C071R1_008.ab1    14 
  699    MoSU008F_E02_BE590476Ld08P005C01C071F1_008.ab1   608 
Contig length: old 790, new 790

Contig length: old 790, new 790
New start: 0