No. words: 1531; after pruning: 1505


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.6 (1,1:611)  592  0.00 0.00 0.49  MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1        1   614 (141)  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1   (165)   611     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  298 nodes

 151 str. conn. components

Path
    1  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1   776 
  177    MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1    12 
  181  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1   596 
  185    MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1    20 
  197  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1   580 
  201    MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1    36 
  237  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1   540 
  241    MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1    76 
  285  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1   492 
  337    MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1   172 
  681  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1    96 
  729    MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1   564 
  738  C MoSU008R_F02_BE590476Ld09P005C01C071R1_006.ab1    40 
  750    MoSU008F_F02_BE590476Ld09P005C01C071F1_006.ab1   585 
Contig length: old 919, new 920

Contig length: old 920, new 920
New start: 0